Desktop · Server · Cloud · ISO 9001
CLC Genomics is a comprehensive bioinformatics platform designed to remove the bottlenecks of data processing. It is available in desktop, server and cloud versions, so it suits individual users as well as larger teams. Analysis workflows are built in a graphical interface, with no coding required. The software is ISO 9001 certified and supports short-read and long-read analysis from commonly used sequencing platforms.
QIAGEN CLC Genomics is a suite of bioinformatics tools for analysing sequencing and other omics data. It is designed for users who do not want or need to build their own workflows in Bash or Python. Analysis workflows are assembled in an intuitive drag-and-drop graphical interface, and results are presented as interactive visualisations and clear tables suitable for further processing, for example in Excel. The platform is used by lab analysts, translational researchers, molecular pathologists and students. ISO 9001 certification applies to the software development process and confirms that its quality is systematically managed.
CLC Genomics supports data from commonly used sequencing platforms, including Illumina, Ion Torrent, Oxford Nanopore, PacBio, MGI and Sanger sequencing, and runs on a range of operating systems. It offers ready-made workflows for a quick start to analysis, which can be further customised to your needs. The solution scales from a standalone desktop installation through an enterprise server to the AWS cloud environment for high-throughput automation and larger numbers of users.
Everyday lab analysis
Scalable NGS solution that includes all features of the Main edition
For the whole lab, any number of users
Bioinformatics accessible from anywhere
Workflows are built in a drag-and-drop interface, with no knowledge of Bash or Python required.
Supports data from Illumina, Ion Torrent, Oxford Nanopore, PacBio, BGI/MGI and Sanger sequencing in a single environment.
Ready-made workflows for RNA-seq, DNA-seq, methylation, variant calling, single-cell analysis and other applications, with the option to customise them.
Efficient algorithms for assembling new genomes without a reference sequence: microorganisms, previously undescribed species and novel viruses.
Read mapping views, variant tables, expression heatmaps and phylogenetic trees. All in one environment.
CLC can be extended with 6 specialised modules for microbiology, single-cell analysis, biomedical genomics, whole-genome alignment, LightSpeed NGS and genome finishing.
Microbial typing, antimicrobial resistance detection, gene finding and annotation, and taxonomic and functional microbiome analysis.
A comprehensive toolset for single-cell analysis: gene expression, spatial transcriptomics, immune repertoire, chromatin accessibility and more.
Ready-made workflows for analysing human, mouse and rat data, including hereditary disease and somatic variant detection.
Comparison and alignment of whole genomes for studying evolutionary relationships.
High-speed NGS data processing for hereditary and somatic variant analysis, with automated processing of raw FASTQ data.
A specialised toolset for finishing and closing high-quality genome assemblies.
Differential expression, alternative splicing, isoform detection and small RNA analysis. Clear visualisations include heatmaps of differentially expressed genes and volcano plots.
Somatic variant detection, tumour-normal comparison and gene fusion detection. Ready-made workflows are available for Twist, QIAseq and TruSight panels.
Workflows for WGS and WES with ACMG-based annotation, GATK-compatible variant calling and annotation via ClinVar and HGMD.
Tools for bacterial genome assembly, plasmid detection, antimicrobial resistance profiling and typing using MLST and wgSNP.
Analysis of 16S and shotgun metagenomic data, taxonomic classification and functional profiling of clinical and environmental samples.
The Single Cell Analysis module provides quality control, clustering, UMAP projection and cell type annotation. It offers an alternative to tools such as Seurat or Scanpy, with no coding required.
We will arrange a trial licence and a presentation for your team, and we can also help convert your existing scripts into CLC workflows.